Index

A

add_family() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) aggregation() (in module lgca.interactions) alignment() (in module lgca.interactions) animate_config() (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) animate_density() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) animate_flux() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) apply_abc() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) apply_inflowbc() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method)

apply_pbc() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) apply_rbc() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method)

B

birth() (in module lgca.ib_interactions) (in module lgca.interactions) (in module lgca.nove_ib_interactions) birthdeath() (in module lgca.ib_interactions) (in module lgca.interactions) (in module lgca.nove_ib_interactions)

birthdeath_cancerdfe() (in module lgca.nove_ib_interactions) birthdeath_discrete() (in module lgca.ib_interactions)

C

c (lgca.base.LGCA_base property) (lgca.cubic_ext.IBLGCA_Cubic attribute) (lgca.cubic_ext.NoVE_IBLGCA_Cubic attribute) (lgca.cubic_ext.NoVE_LGCA_Cubic attribute) (lgca.ib_base.IBLGCA_base property) (lgca.lgca_1d.IBLGCA_1D attribute) (lgca.lgca_1d.LGCA_1D attribute) (lgca.lgca_1d.NoVE_IBLGCA_1D attribute) (lgca.lgca_1d.NoVE_LGCA_1D attribute) (lgca.lgca_3dmoore.IBLGCA_Moore attribute) (lgca.lgca_3dmoore.LGCA_3dMoore attribute) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore attribute) (lgca.lgca_3dmoore.NoVE_LGCA_Moore attribute) (lgca.lgca_cubic.LGCA_Cubic attribute) (lgca.lgca_hex.IBLGCA_Hex attribute) (lgca.lgca_hex.LGCA_Hex attribute) (lgca.lgca_hex.NoVE_IBLGCA_Hex attribute) (lgca.lgca_hex.NoVE_LGCA_Hex attribute) (lgca.lgca_square.LGCA_Square attribute) (lgca.ms_1d.MSLGCA_1D attribute) (lgca.ms_1d.MSLGCA_NoVE_1D attribute) (lgca.ms_cubic.MSLGCA_Cubic attribute) (lgca.ms_cubic.MSLGCA_NoVE_Cubic attribute) (lgca.ms_hex.MSLGCA_Hex attribute) (lgca.ms_hex.MSLGCA_NoVE_Hex attribute) (lgca.ms_moore.MSLGCA_Moore attribute) (lgca.ms_moore.MSLGCA_NoVE_Moore attribute) (lgca.ms_square.MSLGCA_NoVE_Square attribute) (lgca.ms_square.MSLGCA_Square attribute) (lgca.multispecies_base.MultiSpeciesLGCA_base property) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base property) (lgca.nove_base.NoVE_LGCA_base property) (lgca.nove_ib_base.NoVE_IBLGCA_base property) (lgca.square_ext.IBLGCA_Square attribute) (lgca.square_ext.NoVE_IBLGCA_Square attribute) (lgca.square_ext.NoVE_LGCA_Square attribute) calc_entropy() (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) calc_family_generations() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) calc_family_pop_alive() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) calc_flux() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) calc_generation_pop() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) calc_generation_pop_t() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) calc_init_families_pop() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) calc_init_families_pop_t() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) calc_mean_alignment() (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) calc_nematic_tensor() (in module lgca.base) calc_normalized_entropy() (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) calc_permutations() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method)

calc_polar_alignment_parameter() (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) calc_prop_mean() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) calc_prop_mean_spatiotemp() (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.NoVE_IBLGCA_Square method) calc_velocity_correlation() (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) calc_vorticity() (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) channel_weight() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) chemotaxis() (in module lgca.interactions) cix (lgca.cubic_ext.IBLGCA_Cubic attribute) (lgca.cubic_ext.NoVE_IBLGCA_Cubic attribute) (lgca.cubic_ext.NoVE_LGCA_Cubic attribute) (lgca.lgca_3dmoore.IBLGCA_Moore attribute) (lgca.lgca_3dmoore.LGCA_3dMoore attribute) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore attribute) (lgca.lgca_3dmoore.NoVE_LGCA_Moore attribute) (lgca.lgca_cubic.LGCA_Cubic attribute) (lgca.lgca_hex.IBLGCA_Hex attribute) (lgca.lgca_hex.LGCA_Hex attribute) (lgca.lgca_hex.NoVE_IBLGCA_Hex attribute) (lgca.lgca_hex.NoVE_LGCA_Hex attribute) (lgca.lgca_square.LGCA_Square attribute) (lgca.ms_cubic.MSLGCA_Cubic attribute) (lgca.ms_cubic.MSLGCA_NoVE_Cubic attribute) (lgca.ms_hex.MSLGCA_Hex attribute) (lgca.ms_hex.MSLGCA_NoVE_Hex attribute) (lgca.ms_moore.MSLGCA_Moore attribute) (lgca.ms_moore.MSLGCA_NoVE_Moore attribute) (lgca.ms_square.MSLGCA_NoVE_Square attribute) (lgca.ms_square.MSLGCA_Square attribute) (lgca.square_ext.IBLGCA_Square attribute) (lgca.square_ext.NoVE_IBLGCA_Square attribute) (lgca.square_ext.NoVE_LGCA_Square attribute) ciy (lgca.cubic_ext.IBLGCA_Cubic attribute) (lgca.cubic_ext.NoVE_IBLGCA_Cubic attribute) (lgca.cubic_ext.NoVE_LGCA_Cubic attribute) (lgca.lgca_3dmoore.IBLGCA_Moore attribute) (lgca.lgca_3dmoore.LGCA_3dMoore attribute) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore attribute) (lgca.lgca_3dmoore.NoVE_LGCA_Moore attribute) (lgca.lgca_cubic.LGCA_Cubic attribute) (lgca.lgca_hex.IBLGCA_Hex attribute) (lgca.lgca_hex.LGCA_Hex attribute) (lgca.lgca_hex.NoVE_IBLGCA_Hex attribute) (lgca.lgca_hex.NoVE_LGCA_Hex attribute) (lgca.lgca_square.LGCA_Square attribute) (lgca.ms_cubic.MSLGCA_Cubic attribute) (lgca.ms_cubic.MSLGCA_NoVE_Cubic attribute) (lgca.ms_hex.MSLGCA_Hex attribute) (lgca.ms_hex.MSLGCA_NoVE_Hex attribute) (lgca.ms_moore.MSLGCA_Moore attribute) (lgca.ms_moore.MSLGCA_NoVE_Moore attribute) (lgca.ms_square.MSLGCA_NoVE_Square attribute) (lgca.ms_square.MSLGCA_Square attribute) (lgca.square_ext.IBLGCA_Square attribute) (lgca.square_ext.NoVE_IBLGCA_Square attribute) (lgca.square_ext.NoVE_LGCA_Square attribute) ciz (lgca.cubic_ext.IBLGCA_Cubic attribute) (lgca.cubic_ext.NoVE_IBLGCA_Cubic attribute) (lgca.cubic_ext.NoVE_LGCA_Cubic attribute) (lgca.lgca_3dmoore.IBLGCA_Moore attribute) (lgca.lgca_3dmoore.LGCA_3dMoore attribute) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore attribute) (lgca.lgca_3dmoore.NoVE_LGCA_Moore attribute) (lgca.lgca_cubic.LGCA_Cubic attribute) (lgca.ms_cubic.MSLGCA_Cubic attribute) (lgca.ms_cubic.MSLGCA_NoVE_Cubic attribute) (lgca.ms_moore.MSLGCA_Moore attribute) (lgca.ms_moore.MSLGCA_NoVE_Moore attribute) clip_frequencies() (in module lgca.plots) cmap_discretize() (in module lgca.plots) colorbar_index() (in module lgca.plots) contact_guidance() (in module lgca.interactions) convert_bool_to_ib() (lgca.cubic_ext.IBLGCA_Cubic static method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic static method) (lgca.ib_base.IBLGCA_base static method) (lgca.lgca_1d.IBLGCA_1D static method) (lgca.lgca_1d.NoVE_IBLGCA_1D static method) (lgca.lgca_3dmoore.IBLGCA_Moore static method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore static method) (lgca.lgca_hex.IBLGCA_Hex static method) (lgca.lgca_hex.NoVE_IBLGCA_Hex static method) (lgca.nove_ib_base.NoVE_IBLGCA_base static method) (lgca.square_ext.IBLGCA_Square static method) (lgca.square_ext.NoVE_IBLGCA_Square static method) convert_int_to_ib() (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.NoVE_IBLGCA_Square method)

D

dd_alignment() (in module lgca.nove_interactions) di_alignment() (in module lgca.nove_interactions) disarrange() (in module lgca.interactions) draw_wedges() (in module lgca.plots) dy (lgca.lgca_hex.IBLGCA_Hex attribute) (lgca.lgca_hex.LGCA_Hex attribute) (lgca.lgca_hex.NoVE_IBLGCA_Hex attribute) (lgca.lgca_hex.NoVE_LGCA_Hex attribute) (lgca.lgca_square.LGCA_Square attribute) (lgca.ms_hex.MSLGCA_Hex attribute) (lgca.ms_hex.MSLGCA_NoVE_Hex attribute) (lgca.ms_square.MSLGCA_NoVE_Square attribute) (lgca.ms_square.MSLGCA_Square attribute) (lgca.square_ext.IBLGCA_Square attribute) (lgca.square_ext.NoVE_IBLGCA_Square attribute) (lgca.square_ext.NoVE_LGCA_Square attribute)

E

ent_prod() (in module lgca.interactions) estimate_figsize() (in module lgca.plots)

evo_steric() (in module lgca.nove_ib_interactions) excitable_medium() (in module lgca.interactions) excitable_medium_ms() (in module lgca.ms_interactions)

F

filter_family_population_t() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method)

G

get_arr_of_empty_lists() (in module lgca.list_utils) get_cmap() (in module lgca.plots) get_colour() (lgca.plots.IdentityColourMapper method) (lgca.plots.PropertyColourMapper method) get_colour_scale() (lgca.plots.PropertyColourMapper method) get_flux_permutations() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) get_lgca() (in module lgca) get_permutations() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method)

get_prop() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) go_and_grow_mutations() (in module lgca.ib_interactions) go_or_grow() (in module lgca.ib_interactions) (in module lgca.interactions) (in module lgca.nove_ib_interactions) (in module lgca.nove_interactions) go_or_grow_glioblastoma() (in module lgca.nove_ib_interactions) go_or_grow_kappa() (in module lgca.nove_ib_interactions) go_or_grow_kappa_chemo() (in module lgca.nove_ib_interactions) go_or_rest() (in module lgca.interactions) (in module lgca.nove_interactions) gradient() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method)

I

IBLGCA_1D (class in lgca.lgca_1d) IBLGCA_base (class in lgca.ib_base) IBLGCA_Cubic (class in lgca.cubic_ext) IBLGCA_Hex (class in lgca.lgca_hex) IBLGCA_Moore (class in lgca.lgca_3dmoore) IBLGCA_Square (class in lgca.square_ext) IdentityColourMapper (class in lgca.plots) init_coords() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) init_families() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method)

init_nodes() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) interactions (lgca.base.LGCA_base property) (lgca.ib_base.IBLGCA_base property) (lgca.multispecies_base.MultiSpeciesLGCA_base property) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base property) (lgca.nove_base.NoVE_LGCA_base property)

L

lgca module lgca.base module lgca.base_extensions module lgca.cubic_ext module lgca.ib_base module lgca.ib_interactions module lgca.interactions module lgca.lgca_1d module lgca.lgca_3dmoore module lgca.lgca_cubic module lgca.lgca_hex module lgca.lgca_square module lgca.list_utils module lgca.ms_1d module lgca.ms_cubic module lgca.ms_hex module lgca.ms_interactions module lgca.ms_moore module lgca.ms_square module lgca.multispecies_base module lgca.nove_base module lgca.nove_ib_base module lgca.nove_ib_interactions module lgca.nove_interactions module

lgca.plots module lgca.square_ext module lgca.square_plotting module LGCA_1D (class in lgca.lgca_1d) LGCA_3dMoore (class in lgca.lgca_3dmoore) LGCA_base (class in lgca.base) LGCA_Cubic (class in lgca.lgca_cubic) LGCA_Hex (class in lgca.lgca_hex) LGCA_Square (class in lgca.lgca_square) list_families_alive() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) live_animate_density() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) live_animate_flux() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method)

M

module lgca lgca.base lgca.base_extensions lgca.cubic_ext lgca.ib_base lgca.ib_interactions lgca.interactions lgca.lgca_1d lgca.lgca_3dmoore lgca.lgca_cubic lgca.lgca_hex lgca.lgca_square lgca.list_utils lgca.ms_1d lgca.ms_cubic lgca.ms_hex lgca.ms_interactions lgca.ms_moore lgca.ms_square lgca.multispecies_base lgca.nove_base lgca.nove_ib_base lgca.nove_ib_interactions lgca.nove_interactions lgca.plots lgca.square_ext lgca.square_plotting

MSLGCA_1D (class in lgca.ms_1d) MSLGCA_Cubic (class in lgca.ms_cubic) MSLGCA_Hex (class in lgca.ms_hex) MSLGCA_Moore (class in lgca.ms_moore) MSLGCA_NoVE_1D (class in lgca.ms_1d) MSLGCA_NoVE_Cubic (class in lgca.ms_cubic) MSLGCA_NoVE_Hex (class in lgca.ms_hex) MSLGCA_NoVE_Moore (class in lgca.ms_moore) MSLGCA_NoVE_Square (class in lgca.ms_square) MSLGCA_Square (class in lgca.ms_square) muller_plot() (in module lgca.plots) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) MultiSpeciesLGCA_base (class in lgca.multispecies_base) MultiSpeciesNoVE_LGCA_base (class in lgca.multispecies_base)

N

nb_sum() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) nematic() (in module lgca.interactions) NoVE_IBLGCA_1D (class in lgca.lgca_1d) NoVE_IBLGCA_base (class in lgca.nove_ib_base) NoVE_IBLGCA_Cubic (class in lgca.cubic_ext) NoVE_IBLGCA_Hex (class in lgca.lgca_hex) NoVE_IBLGCA_Moore (class in lgca.lgca_3dmoore) NoVE_IBLGCA_Square (class in lgca.square_ext) NoVE_LGCA_1D (class in lgca.lgca_1d) NoVE_LGCA_base (class in lgca.nove_base) NoVE_LGCA_Cubic (class in lgca.cubic_ext) NoVE_LGCA_Hex (class in lgca.lgca_hex) NoVE_LGCA_Moore (class in lgca.lgca_3dmoore) NoVE_LGCA_Square (class in lgca.square_ext) num_families_alive() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method)

num_families_alive_t() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) num_families_total() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) num_families_total_t() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method)

O

only_propagation() (in module lgca.interactions)

P

p_binom() (in module lgca.interactions) persistent_walk() (in module lgca.interactions) plot_config() (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) plot_density() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) (lgca.square_plotting.SquarePlotMixin method) plot_density_cubes() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) plot_flux() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) plot_prop_2dhist() (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.NoVE_IBLGCA_Square method) plot_prop_hist() (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.NoVE_IBLGCA_Square method) plot_prop_spatial() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) plot_prop_timecourse() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) plot_scalarfield() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) print_interactions() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method)

print_nodes() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) propagate_ancestor_to_descendants() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) propagate_family_prop_to_cells() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) propagate_pop_to_parents() (lgca.cubic_ext.IBLGCA_Cubic static method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic static method) (lgca.ib_base.IBLGCA_base static method) (lgca.lgca_1d.IBLGCA_1D static method) (lgca.lgca_1d.NoVE_IBLGCA_1D static method) (lgca.lgca_3dmoore.IBLGCA_Moore static method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore static method) (lgca.lgca_hex.IBLGCA_Hex static method) (lgca.lgca_hex.NoVE_IBLGCA_Hex static method) (lgca.nove_ib_base.NoVE_IBLGCA_base static method) (lgca.square_ext.IBLGCA_Square static method) (lgca.square_ext.NoVE_IBLGCA_Square static method) propagation() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) PropertyColourMapper (class in lgca.plots)

R

r_poly (lgca.lgca_hex.IBLGCA_Hex attribute) (lgca.lgca_hex.LGCA_Hex attribute) (lgca.lgca_hex.NoVE_IBLGCA_Hex attribute) (lgca.lgca_hex.NoVE_LGCA_Hex attribute) (lgca.lgca_square.LGCA_Square attribute) (lgca.ms_hex.MSLGCA_Hex attribute) (lgca.ms_hex.MSLGCA_NoVE_Hex attribute) (lgca.ms_square.MSLGCA_NoVE_Square attribute) (lgca.ms_square.MSLGCA_Square attribute) (lgca.square_ext.IBLGCA_Square attribute) (lgca.square_ext.NoVE_IBLGCA_Square attribute) (lgca.square_ext.NoVE_LGCA_Square attribute) random_reset() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method)

random_walk() (in module lgca.ib_interactions) (in module lgca.interactions) (in module lgca.nove_ib_interactions) (in module lgca.nove_interactions)

S

s_binom() (in module lgca.interactions) set_bc() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) set_dims() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) set_interaction() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method)

set_r_int() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) setup_figure() (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) (lgca.square_plotting.SquarePlotMixin method) SquarePlotMixin (class in lgca.square_plotting)

T

tanh_switch() (in module lgca.interactions) (in module lgca.nove_ib_interactions) timeevo() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) timestep() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method)

total_population() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method) total_population_t() (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) trunc_gauss() (in module lgca.ib_interactions) (in module lgca.nove_ib_interactions)

U

update_dynamic_fields() (lgca.base.LGCA_base method) (lgca.cubic_ext.IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_IBLGCA_Cubic method) (lgca.cubic_ext.NoVE_LGCA_Cubic method) (lgca.ib_base.IBLGCA_base method) (lgca.lgca_1d.IBLGCA_1D method) (lgca.lgca_1d.LGCA_1D method) (lgca.lgca_1d.NoVE_IBLGCA_1D method) (lgca.lgca_1d.NoVE_LGCA_1D method) (lgca.lgca_3dmoore.IBLGCA_Moore method) (lgca.lgca_3dmoore.LGCA_3dMoore method) (lgca.lgca_3dmoore.NoVE_IBLGCA_Moore method) (lgca.lgca_3dmoore.NoVE_LGCA_Moore method) (lgca.lgca_cubic.LGCA_Cubic method) (lgca.lgca_hex.IBLGCA_Hex method) (lgca.lgca_hex.LGCA_Hex method) (lgca.lgca_hex.NoVE_IBLGCA_Hex method) (lgca.lgca_hex.NoVE_LGCA_Hex method) (lgca.lgca_square.LGCA_Square method) (lgca.ms_1d.MSLGCA_1D method) (lgca.ms_1d.MSLGCA_NoVE_1D method) (lgca.ms_cubic.MSLGCA_Cubic method) (lgca.ms_cubic.MSLGCA_NoVE_Cubic method) (lgca.ms_hex.MSLGCA_Hex method) (lgca.ms_hex.MSLGCA_NoVE_Hex method) (lgca.ms_moore.MSLGCA_Moore method) (lgca.ms_moore.MSLGCA_NoVE_Moore method) (lgca.ms_square.MSLGCA_NoVE_Square method) (lgca.ms_square.MSLGCA_Square method) (lgca.multispecies_base.MultiSpeciesLGCA_base method) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base method) (lgca.nove_base.NoVE_LGCA_base method) (lgca.nove_ib_base.NoVE_IBLGCA_base method) (lgca.square_ext.IBLGCA_Square method) (lgca.square_ext.NoVE_IBLGCA_Square method) (lgca.square_ext.NoVE_LGCA_Square method)

V

velocitychannels (lgca.base.LGCA_base property) (lgca.ib_base.IBLGCA_base property) (lgca.multispecies_base.MultiSpeciesLGCA_base property) (lgca.multispecies_base.MultiSpeciesNoVE_LGCA_base property) (lgca.nove_base.NoVE_LGCA_base property) (lgca.nove_ib_base.NoVE_IBLGCA_base property)

W

wetting() (in module lgca.interactions)