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biolgca

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  • Getting started
  • User Guide
    • Types of LGCA
    • Factory reference
    • Lattice geometries
    • Built-in interactions
    • Planned documentation topics
  • Examples
  • API Reference

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  • Documentation overview
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User GuideΒΆ

This part of the documentation introduces the simulator classes in detail. It describes the data structures used by the different LGCA types, explains the implemented lattice geometries and summarises the available interaction rules.

  • Types of LGCA
    • Classical LGCA
    • Identity-based LGCA
    • LGCA without volume exclusion
    • Identity-based LGCA without volume exclusion
    • Multi-species LGCA
    • Data model summary
  • Factory reference
    • Model class matrix
    • Common keyword arguments
    • Examples
    • Placeholders
  • Lattice geometries
    • 1-dimensional lattice
    • 2-dimensional square lattice
    • 2-dimensional hexagonal lattice
    • 3-dimensional cubic lattice
    • 3-dimensional Moore lattice
    • Example
  • Built-in interactions
    • Supported names by family
    • Classical LGCA
    • Identity-based LGCA
    • LGCA without volume exclusion
    • Identity-based LGCA without volume exclusion
    • Multi-species LGCA
    • Custom interactions
  • Planned documentation topics
    • Custom interactions
    • Boundary conditions
    • Plotting cookbook
    • Custom initial conditions
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