lgca.nove_ib_interactions

Interaction functions and helper functions for identity-based LGCA without volume exclusion.

Functions

birth(lgca)

Logistic birth process with inheritable proliferation rates.

birthdeath(lgca)

Birth and death step with heterogenous proliferation rates.

birthdeath_cancerdfe(lgca)

Birth--death step with driver and passenger mutations.

evo_steric(lgca)

Birth--death dynamics with mutations and steric movement.

go_or_grow(lgca)

Evolutionary go-or-grow interaction.

go_or_grow_glioblastoma(lgca)

Clone-level go-or-grow dynamics for glioblastoma evolution.

go_or_grow_kappa(lgca)

Go-or-grow interaction using neighbourhood density.

go_or_grow_kappa_chemo(lgca)

Go-or-grow interaction with chemotactic movement.

random_walk(lgca)

Move cells by uniformly redistributing them among velocity channels.

tanh_switch(rho[, kappa, theta])

Sigmoidal switching function.

trunc_gauss(lower, upper, mu[, sigma, size, rng])

Draw samples from a truncated normal distribution.